PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00009011-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HSF
Protein Properties Length: 245aa    MW: 28126.6 Da    PI: 7.8675
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00009011-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.8e-35131042102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++ ++sws ++nsf+v++++ef+  +Lp+yFkhsnf+SFvRQLn+YgF+k++ e+         weF+++ F +g+++ll
  PSME_00009011-RA  13 FLTKTYDMVDDPATNAMVSWSPSSNSFIVWNPTEFSGVLLPTYFKHSNFSSFVRQLNTYGFHKIDPER---------WEFANEGFLRGHRHLL 96 
                       9********************999*****************************************999.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+k 
  PSME_00009011-RA  97 KNIHRRKP 104
                       *****985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.26E-358102IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-389102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-599102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-191336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3113102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-195163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MPPNGSSNGP PPFLTKTYDM VDDPATNAMV SWSPSSNSFI VWNPTEFSGV LLPTYFKHSN  60
FSSFVRQLNT YGFHKIDPER WEFANEGFLR GHRHLLKNIH RRKPVHSHSQ QQQKGESLSG  120
GACVEIKQLE DETEKLRQEK QGLVIELVRL KQHQQGTEFD LQSMEERLQV MEQRQHRMMA  180
FLAKAVQNPN FVAQLVQHHD KIAHIATTNK KRRLPNHDEV LEIGENGCTG SQIVRYDHDS  240
ASYIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D2e-26110214129Heat shock factor protein 1
5d5v_B2e-26110214129Heat shock factor protein 1
5d5u_B2e-26110214129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1175890.0BT117589.1 Picea glauca clone GQ03904_J01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006854048.21e-100PREDICTED: heat stress transcription factor A-1
SwissprotQ84T613e-91HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A0D6R0701e-102A0A0D6R070_ARACU; Uncharacterized protein
STRINGGLYMA16G13400.11e-93(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.22e-86heat shock factor 3